Maybe I missed something in how tax_glom works but as I did not find any info here nor elsewhere on the web, maybe someone here can help. I do not provide data
Does anyone know how to extract alpha diversity outputs from the estimate_richness() function from the phyloseq package? I am having a hard time finding the cor
I have microbiome data with OTUs identified to the lowest taxonomic level possible. Some of the OTUs are identified to genus, others to family, order, etc. I ne