'rmats2sashimiplot: error retrieving files from chr#
I'm having the following error when trying to run rmats2sashimiplot:
Reading sample label: Abi3bp Controls-1 IncLevel: 0.89
Error retrieving files from chr16: invalid reference chr16
Are you sure chr16 appears in your BAM file?
Aborting plot...
Traceback (most recent call last):
File "/data/home/bt21020/.conda/envs/py.2.7/lib/python2.7/site-packages/MISO/misopy/sa
shimi_plot/sashimi_plot.py", line 293, in
main()
File "/data/home/bt21020/.conda/envs/py.2.7/lib/python2.7/site-packages/MISO/misopy/sa
shimi_plot/sashimi_plot.py", line 289, in main
plot_label=plot_label)
File "/data/home/bt21020/.conda/envs/py.2.7/lib/python2.7/site-packages/MISO/misopy/sa
shimi_plot/sashimi_plot.py", line 160, in plot_event
plot_label=plot_label)
File "/data/home/bt21020/.conda/envs/py.2.7/lib/python2.7/site-packages/MISO/misopy/sa
shimi_plot/plot_utils/plot_gene.py", line 838, in plot_density_from_file
plot_title=plot_title)
File "/data/home/bt21020/.conda/envs/py.2.7/lib/python2.7/site-packages/MISO/misopy/sa
shimi_plot/plot_utils/plot_gene.py", line 392, in plot_density
junction_log_base=junction_log_base)
TypeError: 'AxesSubplot' object is not iterable
mv: cannot stat ‘/data/scratch/bt21020/2022-05-16-sashimi/result/HGS2/test/Sashimi_plot/
chr16:56592604:56592681:+@chr16:56594462:56594536:+@chr16:56642489:56642560:+.pdf’: No s
uch file or directory
I'm using bam files from rmats output so does this mean I have to edit the bam files for the chr column? Please help thank you.
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