'rmats2sashimiplot: error retrieving files from chr#

I'm having the following error when trying to run rmats2sashimiplot:

Reading sample label: Abi3bp Controls-1 IncLevel: 0.89 Error retrieving files from chr16: invalid reference chr16 Are you sure chr16 appears in your BAM file? Aborting plot... Traceback (most recent call last): File "/data/home/bt21020/.conda/envs/py.2.7/lib/python2.7/site-packages/MISO/misopy/sa shimi_plot/sashimi_plot.py", line 293, in main() File "/data/home/bt21020/.conda/envs/py.2.7/lib/python2.7/site-packages/MISO/misopy/sa shimi_plot/sashimi_plot.py", line 289, in main plot_label=plot_label) File "/data/home/bt21020/.conda/envs/py.2.7/lib/python2.7/site-packages/MISO/misopy/sa shimi_plot/sashimi_plot.py", line 160, in plot_event plot_label=plot_label) File "/data/home/bt21020/.conda/envs/py.2.7/lib/python2.7/site-packages/MISO/misopy/sa shimi_plot/plot_utils/plot_gene.py", line 838, in plot_density_from_file plot_title=plot_title) File "/data/home/bt21020/.conda/envs/py.2.7/lib/python2.7/site-packages/MISO/misopy/sa shimi_plot/plot_utils/plot_gene.py", line 392, in plot_density junction_log_base=junction_log_base) TypeError: 'AxesSubplot' object is not iterable mv: cannot stat ‘/data/scratch/bt21020/2022-05-16-sashimi/result/HGS2/test/Sashimi_plot/ chr16:56592604:56592681:+@chr16:56594462:56594536:+@chr16:56642489:56642560:+.pdf’: No s uch file or directory

I'm using bam files from rmats output so does this mean I have to edit the bam files for the chr column? Please help thank you.



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