'Questions about details of the filter back projection
Lately I've been studying the filter back projection, and I download the code from github.com. I was confused the process of the filter back projection. here is part of his code:
def backproject(sinogram, theta):
"""Backprojection function.
inputs: sinogram - [n x m] numpy array where n is the number of projections and m the number of angles
theta - vector of length m denoting the angles represented in the sinogram
output: backprojArray - [n x n] backprojected 2-D numpy array"""
imageLen = sinogram.shape[0] #sinogram : [n x m] , so imageLen = n(height)
reconMatrix = np.zeros((imageLen, imageLen))
x = np.arange(imageLen)-imageLen/2
y = x.copy()
X, Y = np.meshgrid(x, y)
plt.ion()
fig2, ax = plt.subplots()
im = plt.imshow(reconMatrix, cmap='gray')
theta = theta*np.pi/180
numAngles = len(theta)
for n in range(numAngles):
Xrot = X*np.sin(theta[n])-Y*np.cos(theta[n])
XrotCor = np.round(Xrot+imageLen/2)
XrotCor = XrotCor.astype('int')
projMatrix = np.zeros((imageLen, imageLen))
m0, m1 = np.where((XrotCor >= 0) & (XrotCor <= (imageLen-1)))
s = sinogram[:,n]
projMatrix[m0, m1] = s[XrotCor[m0, m1]]
reconMatrix += projMatrix
im.set_data(Image.fromarray((reconMatrix-np.min(reconMatrix))/np.ptp(reconMatrix)*255))
ax.set_title('Theta = %.2f degrees' % (theta[n]*180/np.pi))
fig2.canvas.draw()
fig2.canvas.flush_events()
plt.close()
plt.ioff()
backprojArray = np.flipud(reconMatrix)
return backprojArray
For the loop 'for', I was confused for two weeks. Firstly, I really don't know the following code.
Xrot = X*np.sin(theta[n])-Y*np.cos(theta[n])
XrotCor = np.round(Xrot+imageLen/2) .
I don't know how it works through geometric ways. I have drown the matrix and so on, but I still don't know the priciples.
Lastly, for the code, im.set_data(Image.fromarray((reconMatrix-np.min(reconMatrix))/np.ptp(reconMatrix)*255)) , what does it mean, cause I only know the direct back projection. And I really don't know why there's 255
Solution 1:[1]
Xrot = X*np.sin(theta[n])-Y*np.cos(theta[n])
This is the simple back projection algorithmm. I am also learning it so I will try to make it as simple and concise as possible. There are some steps for FBP.
- Input Sinogram image(Radon Transform) _ Create Filter (Ram filter works best but you can try other High pass filters as well)
- Forward Fourier Transform(
dftfunction ) - Apply Filter
- Inverse Fourier Transform
- Backprojection (Basically reversing the sinogram technique)
Backprojection is simply back projecting the values and add up them to get the original image for each projection.
im.set_data(Image.fromarray((reconMatrix-.min(reconMatrix))/np.ptp(reconMatrix)*255))
I believe this code is normalizing the image nothing else.
Sources
This article follows the attribution requirements of Stack Overflow and is licensed under CC BY-SA 3.0.
Source: Stack Overflow
| Solution | Source |
|---|---|
| Solution 1 | Rohit Das |
