'Is there a way to simplify my gff file? Converting gff file to MCSCANX input
I got the following gff file:
> sl1 FUN_000001 15679 15897 sl1 FUN_000001 15952 17031
> sl1 FUN_000001 17086 17316 sl1 FUN_000001 17371 17454
> sl1 FUN_000001 17508 17702 sl1 FUN_000001 15679 15897
> sl1 FUN_000001 15952 17031 sl1 FUN_000001 17086 17316
> sl1 FUN_000001 17371 17454 sl1 FUN_000001 17508 17702
> sl1 FUN_000002 26991 27390 sl1 FUN_000002 26991 27390
> sl1 FUN_000002 26991 27051 sl1 FUN_000002 27104 27390
> sl1 FUN_000002 26991 27051 sl1 FUN_000002 27104 27390
> sl1 FUN_000003 31856 32689 sl1 FUN_000003 31856 32689
> sl1 FUN_000003 32432 32689 sl1 FUN_000003 31856 32365
> sl1 FUN_000003 32432 32689 sl1 FUN_000003 31856 32365
> sl1 FUN_000004 34247 35148 sl1 FUN_000004 34247 35148
> sl1 FUN_000004 34856 35148 sl1 FUN_000004 34247 34802
> sl1 FUN_000004 34856 35148 sl1 FUN_000004 34247 34802
> sl1 FUN_000005 38975 39306 sl1 FUN_000005 38975 39306
> sl1 FUN_000005 38975 39001 sl1 FUN_000005 39064 39306
> sl1 FUN_000005 38975 39001 sl1 FUN_000005 39064 39306
I need to get only one gene (FUN_*****) with the minor lenght and the major lenght. For example, for gene FUN_000001:
sl1 FUN_000001 15679 15897
sl1 FUN_000001 15952 17031
sl1 FUN_000001 17086 17316
sl1 FUN_000001 17371 17454
sl1 FUN_000001 17508 17702
sl1 FUN_000001 15679 15897
sl1 FUN_000001 15952 17031
sl1 FUN_000001 17086 17316
sl1 FUN_000001 17371 17454
sl1 FUN_000001 17508 17702
my output must be :
sl1 FUN_000001 15679 17702
Itried to use the drop_duplicates in python but only permits to get the first or the last row.
Could anyone help me?
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