'How to group biological samples by colonization similarity using python?
folks.
I have several groups of biological samples with different biological groups that colonize specific áreas (ex: 1BB, 2MN) of a vessel. For example:
I usually plot all those samples in a dendrogram using Bray Curtis similarity, using primer.
My main question is: What can I use to group these áreas of the vessel (samples) by the similarity of colonization? Is it a cluster? A PCO? And how can I do it on python?
Sorry, it’s a little disorganized, I’m doing my best to explain my workflow.
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