'how to find correlation between two datasets and how to get their heatmap
df1=
PRISM|7662 PRISM|7847 PRISM|7855
# Feature / Sample
Methanosphaera_stadtmanae 0.006728 0.000000 0.000000
Rothia_mucilaginosa 0.000000 0.000000 0.000000
Propionibacterium_freudenreichii 0.000000 0.000000 0.000000
Bifidobacterium_adolescentis 0.029346 0.000064 0.000006
Bifidobacterium_animalis 0.000000 0.023177 0.000000
... ... ... ...
Collinsella_stercoris 0.000000 0.000000 0.000000
Bacteroides_clarus 0.000000 0.000000 0.000000
Bacteroides_plebeius 0.000000 0.000000 0.000000
Lactobacillus_delbrueckii 0.000000 0.000000 0.000000
Lactobacillus_sakei 0.000000 0.000000 0.000000
df2=
Validation|LLDeep_0001 \ Validation|LLDeep_0003
# Feature / Sample
Methanosphaera_stadtmanae 0.000000 0.000000
Rothia_mucilaginosa 0.000000 0.000000
Propionibacterium_freudenreichii 0.000000 0.000000
Bifidobacterium_adolescentis 0.028835 0.000000
Bifidobacterium_animalis 0.000000 0.000000
Collinsella_stercoris 0.000000 0.001327
Bacteroides_clarus 0.000000 0.000000
Bacteroides_plebeius 0.000000 0.000142
Lactobacillus_delbrueckii 0.000000 0.000000
Lactobacillus_sakei 0.000000 0.112162
How to find correlation between them?
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