'error when reading multiple samples in Seurat
I'm trying to read multiple samples using Read10X function from the Seurat package.
seurat_list <- lapply(samples, function(sample){
-
seurat_data <- Read10X(paste0(gsub("MNX.*", "", in.list), sample, '/filtered_feature_bc_matrix')) -
return(seurat_data) - })
I'm getting this error:
Error in Read10X(paste0(gsub("MNX.*", "", in.list), sample, "/filtered_feature_bc_matrix")) :
Directory provided does not exist
But when It works when I use this :
lapply(paste0(gsub("MNX.*", "", in.list), samples, '/filtered_feature_bc_matrix'),Read10X)
I don't understand what's the issue.
Thanks a lot.
Sources
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Source: Stack Overflow
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