'Error relocating /usr/src/api/node_modules/sqlite3/lib/binding/napi-v6-linux-x64/node_sqlite3.node: fcntl64: symbol not found?
I have a container running an API that works great. A few days ago I had some problems with my application so I decided to go back and rebuild my Docker container. But everything didn't go as planned... When I restarted with a new rebuilt version I got a sqlite3 error:
api_1 | > node src/index.js
api_1 |
api_1 | internal/modules/cjs/loader.js:1131
api_1 | return process.dlopen(module, path.toNamespacedPath(filename));
api_1 | ^
api_1 |
api_1 | Error: Error relocating /usr/src/api/node_modules/sqlite3/lib/binding/napi-v6-linux-x64/node_sqlite3.node: fcntl64: symbol not found
api_1 | at Object.Module._extensions..node (internal/modules/cjs/loader.js:1131:18)
api_1 | at Module.load (internal/modules/cjs/loader.js:937:32)
api_1 | at Function.Module._load (internal/modules/cjs/loader.js:778:12)
api_1 | at Module.require (internal/modules/cjs/loader.js:961:19)
api_1 | at require (internal/modules/cjs/helpers.js:92:18)
api_1 | at Object.<anonymous> (/usr/src/api/node_modules/sqlite3/lib/sqlite3-binding.js:4:15)
api_1 | at Module._compile (internal/modules/cjs/loader.js:1072:14)
api_1 | at Object.Module._extensions..js (internal/modules/cjs/loader.js:1101:10)
api_1 | at Module.load (internal/modules/cjs/loader.js:937:32)
api_1 | at Function.Module._load (internal/modules/cjs/loader.js:778:12)
FROM node:14.17.6-alpine
# Create the directory!
RUN mkdir -p /usr/src/api
WORKDIR /usr/src/api
# Copy and Install our api
COPY package.json /usr/src/api
RUN npm install
# Our precious api
COPY . /usr/src/api
RUN ln -snf /usr/share/zoneinfo/Europe/Paris /etc/localtime && echo Europe/Paris > /etc/timezone
# Start me!
CMD ["npm", "start"]
I managed to find the version that has the same source code but it works fine. So I try to solve the problem for my next build: Here are the execution traces of the two versions with the same source code.
The execution traces of the build that works:
$ docker build -t $CONTAINER_IMAGE:$CI_COMMIT_SHA ./$PATH_DOCKERFILE
Step 1/8 : FROM node:14.17.6-alpine
14.17.6-alpine: Pulling from library/node
6a428f9f83b0: Pulling fs layer
630852b09df4: Pulling fs layer
f13ad23a48a4: Pulling fs layer
43df7c393f3d: Pulling fs layer
43df7c393f3d: Waiting
6a428f9f83b0: Verifying Checksum
6a428f9f83b0: Download complete
f13ad23a48a4: Verifying Checksum
f13ad23a48a4: Download complete
43df7c393f3d: Verifying Checksum
43df7c393f3d: Download complete
6a428f9f83b0: Pull complete
630852b09df4: Verifying Checksum
630852b09df4: Download complete
630852b09df4: Pull complete
f13ad23a48a4: Pull complete
43df7c393f3d: Pull complete
Digest: sha256:8c94a0291133e16b92be5c667e0bc35930940dfa7be544fb142e25f8e4510a45
Status: Downloaded newer image for node:14.17.6-alpine
---> 1d909dafa77f
Step 2/8 : RUN mkdir -p /usr/src/api
---> Running in d1dc77ffefaf
Removing intermediate container d1dc77ffefaf
---> d00d0ca95030
Step 3/8 : WORKDIR /usr/src/api
---> Running in 01661be5464e
Removing intermediate container 01661be5464e
---> 977f95e8b0fe
Step 4/8 : COPY package.json /usr/src/api
---> 61734ae0ce22
Step 5/8 : RUN npm install
---> Running in 268fb41d9940
npm WARN deprecated [email protected]: Please upgrade to @mapbox/node-pre-gyp: the non-scoped node-pre-gyp package is deprecated and only the @mapbox scoped package will recieve updates in the future
npm WARN deprecated [email protected]: request has been deprecated, see https://github.com/request/request/issues/3142
npm WARN deprecated [email protected]: This version of tar is no longer supported, and will not receive security updates. Please upgrade asap.
npm WARN deprecated [email protected]: this library is no longer supported
npm WARN deprecated [email protected]: Please upgrade to version 7 or higher. Older versions may use Math.random() in certain circumstances, which is known to be problematic. See https://v8.dev/blog/math-random for details.
> [email protected] install /usr/src/api/node_modules/sqlite3
> node-pre-gyp install --fallback-to-build
node-pre-gyp WARN Using request for node-pre-gyp https download
[sqlite3] Success: "/usr/src/api/node_modules/sqlite3/lib/binding/napi-v3-linux-x64/node_sqlite3.node" is installed via remote
npm notice created a lockfile as package-lock.json. You should commit this file.
npm WARN [email protected] No description
added 169 packages from 202 contributors and audited 169 packages in 18.574s
4 packages are looking for funding
run `npm fund` for details
found 5 high severity vulnerabilities
run `npm audit fix` to fix them, or `npm audit` for details
Removing intermediate container 268fb41d9940
---> 9a56f37f5ea0
Step 6/8 : COPY . /usr/src/api
---> e87d419c4d57
Step 7/8 : RUN ln -snf /usr/share/zoneinfo/Europe/Paris /etc/localtime && echo Europe/Paris > /etc/timezone
---> Running in 003be13bd790
Removing intermediate container 003be13bd790
---> 2735e5435222
Step 8/8 : CMD ["npm", "start"]
---> Running in 7315e9692e2e
Removing intermediate container 7315e9692e2e
---> bb1800cf2b98
Successfully built bb1800cf2b98
The traces of execution of the build that does not work:
$ docker build -t $CI_REGISTRY_IMAGE:$CI_COMMIT_REF_NAME .
Step 1/8 : FROM node:14.17.6-alpine
14.17.6-alpine: Pulling from library/node
6a428f9f83b0: Pulling fs layer
630852b09df4: Pulling fs layer
f13ad23a48a4: Pulling fs layer
43df7c393f3d: Pulling fs layer
43df7c393f3d: Waiting
6a428f9f83b0: Verifying Checksum
6a428f9f83b0: Download complete
f13ad23a48a4: Verifying Checksum
f13ad23a48a4: Download complete
43df7c393f3d: Verifying Checksum
43df7c393f3d: Download complete
6a428f9f83b0: Pull complete
630852b09df4: Download complete
630852b09df4: Pull complete
f13ad23a48a4: Pull complete
43df7c393f3d: Pull complete
Digest: sha256:8c94a0291133e16b92be5c667e0bc35930940dfa7be544fb142e25f8e4510a45
Status: Downloaded newer image for node:14.17.6-alpine
---> 1d909dafa77f
Step 2/8 : RUN mkdir -p /usr/src/api
---> Running in c9a3c82cf360
Removing intermediate container c9a3c82cf360
---> 3f3b5ec7912b
Step 3/8 : WORKDIR /usr/src/api
---> Running in 56b15384366c
Removing intermediate container 56b15384366c
---> 221dcba87eb5
Step 4/8 : COPY package.json /usr/src/api
---> 0f369984e965
Step 5/8 : RUN npm install
---> Running in c77ef8c0f496
> [email protected] install /usr/src/api/node_modules/sqlite3
> node-pre-gyp install --fallback-to-build
[sqlite3] Success: "/usr/src/api/node_modules/sqlite3/lib/binding/napi-v6-linux-x64/node_sqlite3.node" is installed via remote
npm notice created a lockfile as package-lock.json. You should commit this file.
npm WARN [email protected] No description
added 159 packages from 175 contributors and audited 159 packages in 17.298s
6 packages are looking for funding
run `npm fund` for details
found 0 vulnerabilities
Removing intermediate container c77ef8c0f496
---> ccb19de751c9
Step 6/8 : COPY . /usr/src/api
---> d43249d2c30a
Step 7/8 : RUN ln -snf /usr/share/zoneinfo/Europe/Paris /etc/localtime && echo Europe/Paris > /etc/timezone
---> Running in b0991e5edfd6
Removing intermediate container b0991e5edfd6
---> 352c6a3611fd
Step 8/8 : CMD ["npm", "start"]
---> Running in 9d878994fc42
Removing intermediate container 9d878994fc42
---> 0adaf22448f1
Successfully built 0adaf22448f1
Sources
This article follows the attribution requirements of Stack Overflow and is licensed under CC BY-SA 3.0.
Source: Stack Overflow
| Solution | Source |
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