Docker-compose and mongoDB: Failed to start up WiredTiger under any compatibility version?

Question

I have the following docker-compose file:

version: "3"

services:

    #
    # APIs
    #----------------------------------------------
       pokerstats:
        image: pokerstats
        container_name: pokerstats
        ports:
          - 8080:8080
        depends_on: 
          - db

    #
    # Utilities
    #----------------------------------------------
      db:
        image: mongo
        container_name: mongo
        volumes:
          - ./data/db:/data/db
        ports:
          - "27018:27017"
        environment:
          MONGO_INITDB_ROOT_USERNAME: admin
          MONGO_INITDB_ROOT_PASSWORD: admin
          MONGO_INITDB_DATABASE: pokerStats

This was working fine before I added volumes. However not when I run: docker-compose up -d the mongo container stops immediately and in the logs I see the error:

2020-04-10T19:17:17.313+0000 I  STORAGE  [initandlisten] wiredtiger_open config: create,cache_size=1457M,cache_overflow=(file_max=0M),session_max=33000,eviction=(threads_min=4,threads_max=4),config_base=false,statistics=(fast),log=(enabled=true,archive=true,path=journal,compressor=snappy),file_manager=(close_idle_time=100000,close_scan_interval=10,close_handle_minimum=250),statistics_log=(wait=0),verbose=[recovery_progress,checkpoint_progress],
2020-04-10T19:17:17.772+0000 E  STORAGE  [initandlisten] WiredTiger error (1) [1586546237:772524][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted Raw: [1586546237:772524][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted
2020-04-10T19:17:17.784+0000 E  STORAGE  [initandlisten] WiredTiger error (17) [1586546237:784001][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: File exists Raw: [1586546237:784001][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: File exists
2020-04-10T19:17:17.785+0000 I  STORAGE  [initandlisten] WiredTiger message unexpected file WiredTiger.wt found, renamed to WiredTiger.wt.1
2020-04-10T19:17:17.788+0000 E  STORAGE  [initandlisten] WiredTiger error (1) [1586546237:788283][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted Raw: [1586546237:788283][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted
2020-04-10T19:17:17.799+0000 E  STORAGE  [initandlisten] WiredTiger error (17) [1586546237:799215][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: File exists Raw: [1586546237:799215][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: File exists
2020-04-10T19:17:17.801+0000 I  STORAGE  [initandlisten] WiredTiger message unexpected file WiredTiger.wt found, renamed to WiredTiger.wt.2
2020-04-10T19:17:17.803+0000 E  STORAGE  [initandlisten] WiredTiger error (1) [1586546237:803211][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted Raw: [1586546237:803211][29:0x7fe9f284fb00], connection: __posix_open_file, 667: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted
2020-04-10T19:17:17.805+0000 W  STORAGE  [initandlisten] Failed to start up WiredTiger under any compatibility version.
2020-04-10T19:17:17.806+0000 F  STORAGE  [initandlisten] Reason: 1: Operation not permitted
2020-04-10T19:17:17.806+0000 F  -        [initandlisten] Fatal Assertion 28595 at src/mongo/db/storage/wiredtiger/wiredtiger_kv_engine.cpp 860

How can I resolve this? I want a mongo volume that will keep my data persisted if the container goes down.

Edit: for reference I am running docker desktop 2.2.0.3 on a Windows 10 Pro machine.

Answer 1

I have some issue when I'm use windows 10. It works at the first time.

docker run -d -p 27017:27017 -v /c/mongo_data:/data/db --name=container-mongodb mongo

After stop container container-mongodb, it failed when I try to start container container-mongodb in 2nd.

docker stop container-mongodb
docker start container-mongodb

docker logs container-mongodb
{"t":{"$date":"2021-10-09T09:40:38.082+00:00"},"s":"E",  "c":"STORAGE",  "id":22435,   "ctx":"initandlisten","msg":"WiredTiger error","attr":{"error":1,"message":"[1633772438:82174][1:0x7f9b65426c80], file:WiredTiger.wt, connection: __posix_open_file, 805: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted"}}
{"t":{"$date":"2021-10-09T09:40:38.098+00:00"},"s":"E",  "c":"STORAGE",  "id":22435,   "ctx":"initandlisten","msg":"WiredTiger error","attr":{"error":1,"message":"[1633772438:98526][1:0x7f9b65426c80], file:WiredTiger.wt, connection: __posix_open_file, 805: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted"}}
{"t":{"$date":"2021-10-09T09:40:38.115+00:00"},"s":"E",  "c":"STORAGE",  "id":22435,   "ctx":"initandlisten","msg":"WiredTiger error","attr":{"error":1,"message":"[1633772438:115018][1:0x7f9b65426c80], file:WiredTiger.wt, connection: __posix_open_file, 805: /data/db/WiredTiger.wt: handle-open: open: Operation not permitted"}}

The solutions quite similar, need to define a docker volume. And use the volume mongodata replace the path /c/mongo_data. It works when I want second docker start.

docker volume create --name=mongodata
docker run -d -p 27017:27017 -v mongodata:/data/db --name=container-mongodb mongo

More detail refer to Windows mount /data/db

Answer 2

Haven't dug deeper to understand why my trial worked, but was following a tutorial and my docker-compose file had:

mongo:
  image: mongo:4.2.8

Ran docker image inspect <existing_mongo_image_id> and the version I had was the latest i.e. "MONGO_VERSION=5.0.6".

Changing my compose file to reflect this version solved my problem i.e.

 mongo:
  image: mongo:5.0.6