'Correlation analysis between 2 datasets using R or python
Dataset 1
ID Protein1 Protein2 Protein3
1
2
3
...
Dataset 2
ID RNA1 RNA2 RNA3
1
2
3
...
How do I write a script that can look at the correlation between each pairwise of protein columns in dataset1 and RNA columns in dataset2 matched by ID?
What I want for output is like:
Interaction Correlation Coefficient
Pritein1-RNA1
Protein1-RNA2
Protein1-RNA3
Protein2-RNA1
Protein2-RNA2
.......
Thanks for your help!
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