'convert ALL genes from ensembl ID to symbol without NAs
I tried to convert genes with ensembl ID to Symbol I used the "EnsDb.Hsapiens.v86" package using this code:
library("EnsDb.Hsapiens.v86")
mapIds <- mapIds(EnsDb.Hsapiens.v86,
keys = genes,
keytype = "GENEID",
column = "SYMBOL")
mapIds
Results is like that:
- ENSG00000033327 GAB2
- ENSG00000033627 ATP6V0A1
- ENSG00000033800 PIAS1
- ENSG00000033867 SLC4A7
- ENSG00000034063 < NA >
- ENSG00000034152 MAP2K3
in summary I have in total 20176 with 761 NAs (in conversion colonne). I got this message also :
Warning message: Unable to map 761 of 20176 requested IDs. Error in file(out, "wt") : cannot open the connection
I want to have 0 NAs using this way or another way or any other package
- my list of ensembl genes to check it https://docs.google.com/document/d/1VVtveHXbOXt8m02ttcAmjHxF59YTFFgOEvyBhyqw13w/edit?usp=sharing
Sources
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Source: Stack Overflow
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