'undefined symbol in SSL when using aria2c
I was trying to run a .sh script for Alphafold software https://github.com/deepmind/alphafold#running-alphafold and when It runs I got the following error:
Downloading AlphaFold parameters...
aria2c: symbol lookup error: aria2c: undefined symbol: SSL_load_error_strings
The code is from Alphafold and takes others .sh files and download the database:
#!/bin/bash
#
# Copyright 2021 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# Downloads and unzips all required data for AlphaFold.
#
# Usage: bash download_all_data.sh /path/to/download/directory
set -e
if [[ $# -eq 0 ]]; then
echo "Error: download directory must be provided as an input argument."
exit 1
fi
if ! command -v rsync &> /dev/null ; then
echo "Error: rsync could not be found. Please install rsync."
exit
fi
if ! command -v aria2c &> /dev/null ; then
echo "Error: aria2c could not be found. Please install aria2c (sudo apt install aria2)."
exit
fi
DOWNLOAD_DIR="$1"
SCRIPT_DIR="$(dirname "$(realpath "$0")")"
echo "Downloading AlphaFold parameters..."
bash "${SCRIPT_DIR}/download_alphafold_params.sh" "${DOWNLOAD_DIR}"
echo "Downloading BFD..."
bash "${SCRIPT_DIR}/download_bfd.sh" "${DOWNLOAD_DIR}"
echo "Downloading MGnify..."
bash "${SCRIPT_DIR}/download_mgnify.sh" "${DOWNLOAD_DIR}"
echo "Downloading PDB70..."
bash "${SCRIPT_DIR}/download_pdb70.sh" "${DOWNLOAD_DIR}"
echo "Downloading PDB mmCIF files..."
bash "${SCRIPT_DIR}/download_pdb_mmcif.sh" "${DOWNLOAD_DIR}"
echo "Downloading Uniclust30..."
bash "${SCRIPT_DIR}/download_uniclust30.sh" "${DOWNLOAD_DIR}"
echo "Downloading Uniref90..."
bash "${SCRIPT_DIR}/download_uniref90.sh" "${DOWNLOAD_DIR}"
echo "All data downloaded."
I got all .sh files in the same folder, and I`m using the following usage:
./download_all_data.sh DOWNLOAD_DIR
Could anyone help me?
Sources
This article follows the attribution requirements of Stack Overflow and is licensed under CC BY-SA 3.0.
Source: Stack Overflow
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