'Making a matrix dist without calculating distance
I have two matrices that I'm trying to run a mantel test on. To do this, they need to be in a distance format. But, I don't want R to actually calculate the distances because the data was already given to me like that.
Here's the data for one of the matrices:
structure(list(x1 = c(0, -0.1088, -0.0596, 0.016, -0.1421, -0.0695
), x10 = c(-0.1088, 0, -0.3956, -0.033, -0.2131, 0.8684), x11 = c(-0.0596,
-0.3956, 0, -0.2305, -0.1318, -0.3511), x12 = c(0.016, -0.033,
-0.2305, 0, 0.1366, 0.0713), x13 = c(-0.1421, -0.2131, -0.1318,
0.1366, 0, -0.3475), x14 = c(-0.0695, 0.8684, -0.3511, 0.0713,
-0.3475, 0), x15 = c(-0.0292, -0.0423, 0.0078, 0.1942, -0.1282,
0.0217), x16 = c(-0.1414, -0.04, -0.2897, -0.0763, 0.0065, 0.0065
), x17 = c(-0.2187, -0.3763, 0.1088, -0.2325, 0.1434, 0.1434),
x19 = c(-0.3659, -0.0448, -0.0111, -0.2102, 0.3083, 0.3083
), x2 = c(-0.0741, 0.1489, 0.0561, -0.2504, -0.1897, 0.1086
), x20 = c(-0.1116, 0.0769, 0.2165, -0.3238, -0.4169, -0.4169
), x21 = c(-0.0414, -0.3102, 0.0743, -0.0188, 0.1548, 0.1548
), x4 = c(0.063, -0.2877, 0.1761, -0.2661, -0.2474, -0.2404
), x6 = c(-0.2049, 0.4101, -0.1072, 0.1416, -0.0072, 0.3065
), x7 = c(0.1261, -0.0432, 0.1472, -0.0896, -0.5046, -0.0523
), x8 = c(-0.3185, 0.2082, 0.1287, -0.3091, 0.1521, -0.0381
), x9 = c(0.0288, -0.1159, 0.063, -0.2431, -0.4076, 0.1407
)), row.names = c(NA, -6L), class = c("tbl_df", "tbl", "data.frame"
), na.action = structure(19:25, .Names = c("19", "20", "21",
"22", "23", "24", "25"), class = "omit"))
I also tried doing this:
class(geneticmatrixmantel) <- "dist"
but that created a list instead of a matrix.
Any help would be appreciated.
Sources
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Source: Stack Overflow
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