'GlmmTMB model and emmeans
I am new to glmmtmb models, so i have ran into a problem. I build a model and then based on the AICtab and DHARMa this was the best:
Insecticide_2<- glmmTMB(Insect_abundace~field_element+land_distance+sampling_time+year+treatment_day+(1|field_id),
data=Insect_002,
family= nbinom2)
After glmmTMB i ran Anova (from Car), and then emmeans, but the results of p-values in emmeans are the same (not lower.CL or upper.CL). What may be the problem? Is the model overfitted? Is the way i am doing the emmeans wrong?
Anova also showed that the land_distance, sampling_time, treatment_day were significant, year was almost significant (p= 0.07)
comp_emmeans1<-emmeans(Insect_002, pairwise ~ land_distance|year , type = "response")
> comp_emmeans1
$emmeans
Year = 2018:
land_distance response SE df lower.CL upper.CL
30m 2.46 0.492 474 1.658 3.64
50m 1.84 0.369 474 1.241 2.73
80m 1.36 0.283 474 0.906 2.05
110m 1.25 0.259 474 0.836 1.88
Year = 2019:
land_distance response SE df lower.CL upper.CL
30m 3.42 0.593 474 2.434 4.81
50m 2.56 0.461 474 1.799 3.65
80m 1.90 0.335 474 1.343 2.68
110m 1.75 0.317 474 1.222 2.49
Results are averaged over the levels of: field_element, sampling_time, treatment_day
Confidence level used: 0.95
Intervals are back-transformed from the log scale
$contrasts
year = 2018:
contrast ratio SE df null t.ratio p.value
30m / 50m 1.34 0.203 474 1 1.906 0.2268
30m / 80m 1.80 0.279 474 1 3.798 0.0009
30m / 110m 1.96 0.311 474 1 4.239 0.0002
50m / 80m 1.35 0.213 474 1 1.896 0.2311
50m / 110m 1.47 0.234 474 1 2.405 0.0776
80m / 110m 1.09 0.176 474 1 0.516 0.9552
year = 2019:
contrast ratio SE df null t.ratio p.value
30m / 50m 1.34 0.203 474 1 1.906 0.2268
30m / 80m 1.80 0.279 474 1 3.798 0.0009
30m / 110m 1.96 0.311 474 1 4.239 0.0002
50m / 80m 1.35 0.213 474 1 1.896 0.2311
50m / 110m 1.47 0.234 474 1 2.405 0.0776
80m / 110m 1.09 0.176 474 1 0.516 0.9552
Results are averaged over the levels of: field_element, sampling_time, treatment_day
P value adjustment: tukey method for comparing a family of 4 estimates
Tests are performed on the log scale
Should i use different comparison way? I saw that some use poly~, I tried that, results picture is the same. Also am I comparing the right things?
Last and also important question is how should i report the glmmTMB, Anova and emmeans results?
Sources
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