'Error when trying to download species models in R with ebirdst::ebirdst_download()
I've requested an access key and set it. Sys.getenv("EBIRDST_KEY")
returns the correct key. ebirdst_download(species = "Sharp-tailed Grouse")
returns an error
Error in ebirdst_download(species = "Sharp-tailed Grouse") : Cannot access Status and Trends data URL. Ensure that you have a working internet connection and a valid API key for the Status and Trends data.
My internet is working. Looking at the source code, I believe the error is generated because the function reads a url, essentially read_json(stringr::str_glue("{api_url}list-obj/{species}?key={key}"))
which for some reason is null.
But I can get it to work if I use the following lines of the source code. I'm not sure why the ebirdst function is failing.
species<-"Sharp-tailed Grouse"
path = rappdirs::user_data_dir("ebirdst")
species <- get_species(species)
which_run <- which(ebirdst::ebirdst_runs$species_code == species)
run <- ebirdst::ebirdst_runs$run_name[which_run]
key<-Sys.getenv("EBIRDST_KEY")
api_url <- "https://st-download.ebird.org/v1/"
list_obj_url <- stringr::str_glue("{api_url}list-obj/{species}?key={key}")
files <-jsonlite::read_json(list_obj_url, simplifyVector = TRUE)
files <- data.frame(file = files)
files <- files[!stringr::str_detect(files$file, "\\.db$"), , drop = FALSE]
files$src_path <- stringr::str_glue("{api_url}fetch?objKey={files$file}",
"&key={key}")
files$dest_path <- file.path(path, files$file)
files$exists <- file.exists(files$dest_path)
dirs <- unique(dirname(files$dest_path))
for (d in dirs) {
dir.create(d, showWarnings = FALSE, recursive = TRUE)
}
old_timeout <- getOption("timeout")
options(timeout = max(3000, old_timeout))
for (i in seq_len(nrow(files))) {
dl_response <- utils::download.file(files$src_path[i],
files$dest_path[i],
mode = "wb")
if (dl_response != 0) {
stop("Error downloading file: ", files$file[i])
}
}
Sources
This article follows the attribution requirements of Stack Overflow and is licensed under CC BY-SA 3.0.
Source: Stack Overflow
Solution | Source |
---|