'Error in makeClassifTask - columns to join must specify "on="
I am getting an error here for the makeClassifTask() from MLR package.
task = makeClassifTask(data = data[,2:20441], target='Disease')
Entering this I get this error.
Provided data is not a pure data.frame but from class data.table, hence it will be converted. Error in
[.data.table(data, target) : When i is a data.table (or character vector), the columns to join by must be specified using 'on=' argument (see ?data.table), by keying x (i.e. sorted, and, marked as sorted, see ?setkey), or by sharing column names between x and i (i.e., a natural join). Keyed joins might have further speed benefits on very large data due to x being sorted in RAM.
If someone could help me out it'd be great.
Solution 1:[1]
Given that you did not provide the data I can only do some guessing and suggest to read the documentation at https://mlr3book.mlr-org.com/tasks.html.
It looks like you left out the first column in your dataset which might be your target. Hence makeClassifTask() cannot find your target column.
Solution 2:[2]
As @Shreyash Gputa pointed out correctly, changing the data.table object to a data.frame object solves the issue:
task = makeClassifTask(data = as.data.frame(data[,2:20441]), target='Disease')
Given of course that data[,2:20441] contains the target variable Disease...
Sources
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Source: Stack Overflow
| Solution | Source |
|---|---|
| Solution 1 | pat-s |
| Solution 2 | MJimitater |