Category "snakemake"

Accessing the path of the `--configfile` within Snakefile

Using Snakemake, is there any way to access the path of a config file passed to the workflow using the --configfile flag? From poking around in the source for t

snakemake --use-conda with an already created envs

I work on an SGE cluster where some tools are available with conda : source activate unicycler-0.4.7 I can use conda on my snakemake workflow with yaml, but